Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t SelU1_Human.1.subseq.fa]
Hostname: [ws116052]

C4 Alignment:
------------
         Query: SelU1_Human
        Target: KI537623.1:subseq(2074423,200167) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold209, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1080
   Query range: 0 -> 229
  Target range: 106637 -> 96641

      1 : MetSerPheLeuGlnAspProSerPhePheThrMetGlyMetTrpSerIleGlyAlaG :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetSerPheLeuGlnAspProSerPhePheThrMetGlyMetTrpSerIleGlyAlaG
 106637 : ATGTCTTTCCTCCAGGATCCAAGTTTCTTCACCATGGGAATGTGGTCCATTGGTGCGG : 106580

     21 : lyAlaLeuGlyAlaAlaAlaLeuAlaLeuLeuLeuAlaAsnThrAspValPheLeuSe :     39
          |||||:!!|||||||||||||||||||||:!!||||||||||||||||||||||||:!
          lyAlaIleGlyAlaAlaAlaLeuAlaLeuIleLeuAlaAsnThrAspValPheLeuAl
 106579 : GGGCCATAGGGGCTGCTGCCTTGGCACTGATCCTGGCCAACACAGACGTATTTCTGGC : 106523

     40 : rLysProGlnLysAlaAlaLeuGluTyrLeuGluAspIleAspLeuLysThrLeuGlu :     58
          !|||||||||||||||.!!|||||||||||||||||||||||||||||||||||||||
          aLysProGlnLysAlaThrLeuGluTyrLeuGluAspIleAspLeuLysThrLeuGlu
 106522 : CAAGCCCCAGAAAGCAACGCTGGAGTATCTGGAGGATATAGACCTGAAAACACTGGAG : 106466

     59 : Lys{G}  >>>> Target Intron 1 >>>>  {lu}ProArgThrPheLysAlaL :     67
          |||{|}           2341 bp           {||}|||! !|||||||||||||
          Lys{G}++                         ++{lu}ProMetThrPheLysAlaL
 106465 : AAG{G}gt.........................ag{AA}CCAATGACTTTTAAAGCAA : 104098

     68 : ysGluLeuTrpGluLysAsnGlyAlaValIleMetAlaValArgArgProGlyCysPh :     86
          ||! !|||||||||!!.|||||||||||||||||||||||||||||||||||||||||
          ysAlaLeuTrpGluAsnAsnGlyAlaValIleMetAlaValArgArgProGlyCysPh
 104097 : AGGCGCTCTGGGAAAATAACGGAGCTGTGATTATGGCTGTGCGGAGGCCAGGCTGTTT : 104041

     87 : eLeuCysArgGlu  >>>> Target Intron 2 >>>>  GluAlaAlaAspLeuS :     96
          |||||||||||||           3114 bp           ||||||||||||||||
          eLeuCysArgGlu++                         ++GluAlaAlaAspLeuS
 104040 : CCTCTGTCGAGAGgt.........................agGAGGCTGCAGACCTGT : 100897

     97 : erSerLeuLysSerMetLeuAspGlnLeuGlyValProLeuTyrAlaValValLysGl :    115
          ||||||||||| !!! !||||||:!!||||||:!!|||||||||||||||||||||||
          erSerLeuLysProLysLeuAspGluLeuGlyIleProLeuTyrAlaValValLysGl
 100896 : CCTCCCTGAAGCCCAAGTTGGACGAGCTGGGCATCCCCCTGTACGCAGTGGTAAAGGA : 100840

    116 : uHisIleArgThrGluValLysAspPheGlnProTyrPheLysGlyGluIlePheLeu :    134
          |!!.:!!!:!||||||||||||||||||||||||||||||||||||||||||||||||
          uGlnValLysThrGluValLysAspPheGlnProTyrPheLysGlyGluIlePheLeu
 100839 : GCAGGTCAAGACTGAAGTGAAGGACTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTG : 100783

    135 : AspGluLys  >>>> Target Intron 3 >>>>  LysLysPheTyrGlyProGl :    144
          |||||||||            607 bp           ||||||||||||||||||:!
          AspGluLys++                         ++LysLysPheTyrGlyProGl
 100782 : GATGAAAAGgt.........................agAAGAAGTTCTATGGTCCCGA : 100146

    145 : nArgArgLysMetMetPheMetGlyPheIleArgLeuGlyValTrpTyrAsnPhePhe :    163
          !|||||||||||||||||||||||||||:!!|||||||||||||||||||||||||||
          uArgArgLysMetMetPheMetGlyPheValArgLeuGlyValTrpTyrAsnPhePhe
 100145 : AAGGCGCAAGATGATGTTCATGGGATTTGTCCGTCTGGGCGTCTGGTACAACTTCTTC : 100089

    164 : ArgAlaTrpAsnGlyGlyPheSerGlyAsnLeuGluGlyGluGlyPheIleLeuGlyG :    183
          |||||| !!!:!||||||||||||||||||||||||||||||||||||||||||||||
          ArgAlaArgSerGlyGlyPheSerGlyAsnLeuGluGlyGluGlyPheIleLeuGlyG
 100088 : CGGGCCCGGAGCGGAGGCTTTTCCGGAAACCTGGAAGGCGAGGGCTTCATCCTTGGGG : 100029

    184 : lyValPheValValGlySerGlyLysGln  >>>> Target Intron 4 >>>>   :    193
          ||||||||||||||||| !!|||||||||           3247 bp           
          lyValPheValValGlyProGlyLysGln++                         ++
 100028 : GAGTTTTTGTGGTGGGACCAGGAAAGCAGgt.........................ag :  96754

    194 : GlyIleLeuLeuGluHisArgGluLysGluPheGlyAspLysValAsnLeuLeuSerV :    212
          |||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||
          GlyIleLeuLeuGluHisArgGluLysGluPheGlyAspLysValAsnLeuValSerV
  96753 : GGCATTCTTCTGGAGCACCgagaaaaagaatttggagaCAAAGTAAACCTAGTTTCTG :  96695

    213 : alLeuGluAlaAlaLysMetIleLysProGlnThrLeuAlaSerGluLysLys :    229
          ||||||||||||||!:!! !|||||||||||||||! !|||||||||||||||
          alLeuGluAlaAlaArgLysIleLysProGlnThrSerAlaSerGluLysLys
  96694 : TTCTGGAAGCTGCTAGGAAGATCAAACCACAGACTTCAGCCTCAGAGAAAAAA :  96642

vulgar: SelU1_Human 0 229 . KI537623.1:subseq(2074423,200167) 106637 96641 - 1080 M 59 177 S 0 1 5 0 2 I 0 2337 3 0 2 S 1 2 M 30 90 5 0 2 I 0 3110 3 0 2 M 47 141 5 0 2 I 0 603 3 0 2 M 55 165 5 0 2 I 0 3243 3 0 2 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	gene	96642	106637	1080	-	.	gene_id 1 ; sequence SelU1_Human ; gene_orientation +
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	cds	106460	106637	.	-	.	
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	exon	106460	106637	.	-	.	insertions 0 ; deletions 0
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	splice5	106458	106459	.	-	.	intron_id 1 ; splice_site "GT"
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	intron	104119	106459	.	-	.	intron_id 1
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	splice3	104119	104120	.	-	.	intron_id 0 ; splice_site "aG"
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	cds	104027	104118	.	-	.	
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	exon	104027	104118	.	-	.	insertions 0 ; deletions 0
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	splice5	104025	104026	.	-	.	intron_id 2 ; splice_site "GT"
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	intron	100913	104026	.	-	.	intron_id 2
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	splice3	100913	100914	.	-	.	intron_id 1 ; splice_site "AG"
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	cds	100772	100912	.	-	.	
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	exon	100772	100912	.	-	.	insertions 0 ; deletions 0
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	splice5	100770	100771	.	-	.	intron_id 3 ; splice_site "GT"
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	intron	100165	100771	.	-	.	intron_id 3
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	splice3	100165	100166	.	-	.	intron_id 2 ; splice_site "AG"
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	cds	100000	100164	.	-	.	
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	exon	100000	100164	.	-	.	insertions 0 ; deletions 0
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	splice5	99998	99999	.	-	.	intron_id 4 ; splice_site "GT"
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	intron	96753	99999	.	-	.	intron_id 4
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	splice3	96753	96754	.	-	.	intron_id 3 ; splice_site "AG"
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	cds	96642	96752	.	-	.	
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	exon	96642	96752	.	-	.	insertions 0 ; deletions 0
KI537623.1:subseq(2074423,200167)	exonerate:protein2genome:local	similarity	96642	106637	1080	-	.	alignment_id 1 ; Query SelU1_Human ; Align 106638 1 177 ; Align 104117 61 90 ; Align 100913 91 141 ; Align 100165 138 165 ; Align 96753 193 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
